Download height(px):

Download width(px):

Png/Jpeg dpi:

pdf png jpeg

The format of sample files for uploading is as follows.

You can download alpha data and meta data .

Alpha data

Meta data

The second column is group information, named 'Group'.

Alpha diversity mapping description

Upload sample data

You need to upload two data files including alpha diversity result file and metadata file.

Such as

Sample	berger_parker	buzas_gibson	chao1	dominance	equitability	jost	jost1	reads	richness	robbins	simpson	shannon_e	shannon_2	shannon_10
HSL001	0.059	0.0636	637.5	0.986	0.814	105.8	190.7	3000	631	0.541	0.014	5.25	7.58	2.28
HSL003	0.0483	0.144	965.7	0.993	0.883	246.3	430.7	3000	961	0.554	0.00679	6.07	8.75	2.63
HSL004	0.041	0.122	929.5	0.992	0.865	205.2	367.3	3000	922	0.587	0.00775	5.91	8.52	2.57
HSL006	0.0613	0.055	545.5	0.985	0.813	96.4	165.1	3000	536	0.551	0.0153	5.11	7.37	2.22
HSL010	0.185	0.0443	593.8	0.959	0.767	49.7	132.8	3000	587	0.56	0.041	4.89	7.05	2.12
HSL013	0.104	0.0928	883.9	0.982	0.831	115.7	278.3	3000	876	0.597	0.0175	5.63	8.12	2.44

The first column is the sample id,the other column is the different alpha index values.

SampleID	Group
HSL001	HSL
HSL002	HSL
HSL003	HSL
HSL004	HSL
HSL005	HSL
HSL006	HSL
HSL007	HSL
HSL008	HSL
HSL009	HSL
HSL010	HSL
HSL011	HSL
HSL012	HSL
HSL013	HSL

The first column is the sample id,the second column is the grouping of samples.

Paying attention, please ,you need to upload the file in the format of the sample data

Different alpha index values ,and statistical methods

After uploading your datas,you need to select which column in the first file you need to use for drawing,and the statistical methods you need to use.

Two methods based on t test and kruskal wallis test are performed on input data

Different drawing tools

box-plot

pirates

The color palette of the plot. the name of a palette in the piratepal() function (e.g.; “basel”, “google”, “southpark”).

Choose a different theme

cloudyrain

This button allows you to choose whether to transpose the graphics.

The box diagram can be regarded as a cloud diagram, a box diagram, and raindrops composed of three parts; the positional relationship of the three components can be adjusted through the following parameters

With this parameter, you can adjust the raindrops to be above or below the axis of the cloud graph. The top is + and the bottom is -.
With this parameter you can adjust the width of the box chart.
With this parameter, you can adjust the box shape above or below the axis of the cloud graph. The top is + and the bottom is -.
With this parameter, you can adjust the distribution spacing on the horizontal axis of the raindrop graph.
With this parameter you can adjust the size of the raindrops.

violin

About MicrobioSee

MicrobioSee, a web-based community microbial metagenome visualization toolkit developed in this study can be used on all operating system platforms that support modern browsers, and MicrobioSee provides data mining and visualization services for the field of microbial integration research.
The detail of MicrobioSee at here.
Less is more.

Contact us

PI:Chengjian Jiang
Guangxi Research Center for Microbial and Enzyme Engineering Technology College of Life Science and Technology, Guangxi University, Nanning 530004, China.
E-mail: jiangcj@gxu.edu.cn

Update Log

2021-12-15 We developed a Windows client for MicrobioSee,and macos version is being developed.
2021-11-23 We have completed the migration of all services. After that, the update log is moved to the Instruction
2021-11-17 The tutorials were made into videos posted on YouTube and Bilibili.
2021-11-14 Debuged the Stacked Bar Charts.
2021-11-10 Sorted out the code and added the funciton of upset map
2021-11-03 Completed documentation of instructions. Fixed known bugs.
2021-9-1 Major development work completed.

Alpha Plot