The sample file format for uploading is as follows.
You can download sample data here .
Rose mapping description
Upload sample data
You need to upload one data files including abundance table.
Such as
| Name | Test1 | Test2 | Test3 | Test4 | Test5 | Test6 | Test7 | Test8 | Test9 | Test10 |
|---|---|---|---|---|---|---|---|---|---|---|
| Gene1 | 1.95002 | 1.077037 | 3.208613 | -1.78024 | 3.279443 | 0.629247 | 3.120752 | 0.138576 | 3.937684 | -1.32603 |
| Gene2 | 3.276197 | -1.86572 | 3.014863 | -0.40556 | 1.566751 | 0.330443 | 3.965179 | -1.41725 | 0.303218 | 0.190562 |
| Gene3 | 3.317709 | -0.10454 | 2.960807 | -0.19455 | 2.742558 | -0.81468 | 2.012905 | 1.719803 | 1.787089 | 0.154111 |
| Gene4 | 4.134366 | -1.90081 | 1.460098 | -0.60399 | 2.910103 | 0.959671 | 2.182429 | -1.31582 | 2.640119 | -0.06878 |
| Gene5 | 3.94789 | 1.240085 | 3.936332 | 0.84429 | 3.990053 | 0.694025 | 3.932734 | -0.55117 | 2.80075 | -0.70247 |
Paying attention, please ,you need to upload the file in the format of the sample data.
draw
If the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are “row”, “column” and “none”.
The agglomeration method to be used. This should be (an unambiguous abbreviation of) one of “ward.D”, “ward.D2”, “single”, “complete”, “average” (= UPGMA), “mcquitty” (= WPGMA), “median” (= WPGMC) or “centroid” (= UPGMC).
Whether to add a border
- Whether to cluster rows and columns
- Select the information to be displayed on the table
About MicrobioSee
MicrobioSee, a web-based community microbial metagenome visualization toolkit developed in this study can be used on all operating system platforms that support modern browsers, and MicrobioSee provides data mining and visualization services for the field of microbial integration research.
The detail of MicrobioSee at here.
Less is more.
Contact us
PI:Chengjian Jiang
Guangxi Research Center for Microbial and Enzyme Engineering Technology College of Life Science and Technology, Guangxi University, Nanning 530004, China.
E-mail: jiangcj@gxu.edu.cn
Update Log
2021-12-15 We developed a Windows client for MicrobioSee,and macos version is being developed.
2021-11-23 We have completed the migration of all services. After that, the update log is moved to the Instruction
2021-11-17 The tutorials were made into videos posted on YouTube and Bilibili.
2021-11-14 Debuged the Stacked Bar Charts.
2021-11-10 Sorted out the code and added the funciton of upset map
2021-11-03 Completed documentation of instructions. Fixed known bugs.
2021-9-1 Major development work completed.
